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27Dec14
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Make the following selections or
Enter ChromDB IDs and locus numbers
1. Select organisms (hold Ctl to select multiple) (or
Select Taxon
)
All
Acorus americanus
Aedes aegypti
Aegilops speltoides
Agapanthus praecox
Ajellomyces capsulatus NAm1
Allium cepa
Allium sativum
Amborella trichopoda
Anopheles gambiae str. PEST
Antirrhinum majus
Apis mellifera
Apium graveolens
Aquilegia alpina
Aquilegia coerulea
Aquilegia formosa x Aquilegia pubescens
Arabidopsis lyrata
Arabidopsis thaliana
Arachis hypogaea
Aranda deborah
Ascobolus immersus
Ashbya gossypii ATCC 10895
Asparagus officinalis
Asparagus virgatus
Aspergillus clavatus NRRL 1
Aspergillus flavus NRRL3357
Aspergillus fumigatus
Aspergillus nidulans FGSC A4
Aspergillus niger CBS 513.88
Aspergillus oryzae RIB40
Aspergillus terreus NIH2624
Avena sativa
Batrachochytrium dendrobatidis JEL423
Beta vulgaris
Bos taurus
Botryotinia fuckeliana B05.10
Brachypodium distachyon
Brassica napus
Brassica oleracea
Caenorhabditis elegans
Callitropsis nootkatensis
Canavalia gladiata
Candida albicans
Candida glabrata CBS 138
Candida lusitaniae ATCC 42720
Candida tropicalis MYA-3404
Canis familiaris
Capitella sp.1
Capsella rubella
Capsicum annuum
Carica papaya
Castanea mollissima
Ceratopteris richardii
Chaetomium globosum CBS 148.51
Chlamydomonas reinhardtii
Cicer arietinum
Ciona intestinalis
Citrus clementina
Citrus sinensis
Coccidioides immitis RS
Coccidioides posadasii RMSCC 3488
Coffea arabica
Coffea canephora
Coprinus cinereus okayama7#130
Cryptococcus neoformans var. neoformans JEC21
Cryptosporidium parvum
Cucumis sativus
Cyanidioschyzon merolae strain 10D
Cycas rumphii
Danio rerio
Daucus carota
Debaryomyces hansenii CBS767
Dendrobium grex Madame Thong-In
Dictyostelium discoideum AX4
Dictyostelium purpureum
Drosophila melanogaster
Drosophila pseudoobscura pseudoobscura
Ectocarpus siliculosus
Elaeis guineensis
Emiliania huxleyi CCMP1516
Equus caballus
Eschscholzia californica
Eucalyptus globulus subsp. globulus
Eucalyptus grandis
Eucalyptus occidentalis
Euphorbia esula
Eutrema halophilum
Festuca pratensis
Fragaria x ananassa
Fritillaria agrestis
Fritillaria liliacea
Fusarium oxysporum f. sp. lycopersici
Gallus gallus
Gerbera hybrid cultivar
Gibberella moniliformis 7600
Gibberella zeae PH-1
Glycine max
Glycine soja
Gnetum gnemon
Gossypium arboreum
Gossypium hirsutum
Helianthus annuus
Homo sapiens
Hordeum vulgare
Hyacinthus orientalis
Ipomoea batatas
Ipomoea nil
Ipomoea trifida
Kluyveromyces lactis NRRL Y-1140
Laccaria bicolor
Lactuca sativa
Lactuca serriola
Lathyrus aphaca
Lathyrus sativus
Lens culinaris
Lilium longiflorum
Linum usitatissimum
Liriodendron tulipifera
Lodderomyces elongisporus NRRL YB-4239
Lolium multiflorum
Lolium perenne
Lolium temulentum
Lotus japonicus
Lupinus albus
Lycopodium annotinum
Macaca mulatta
Magnaporthe oryzea 70-15
Magnolia praecocissima
Malus x domestica
Manihot esculenta
Medicago sativa
Medicago truncatula
Mesembryanthemum crystallinum
Micromonas pusilla CCMP1545
Micromonas pusilla NOUM17
Mimulus guttatus
Monodelphis domestica
Monosiga brevicollis
Mus musculus
Musa acuminata
Musa balbisiana
Nectria haematococca
Neurospora crassa OR74A
Nicotiana benthamiana
Nicotiana tabacum
Ornithorhynchus anatinus
Oryza sativa (indica cultivar-group)
Oryza sativa ssp. japonica
Ostreococcus lucimarinus
Ostreococcus sp. RCC809
Ostreococcus tauri
Pan troglodytes
Panicum virgatum
Paracoccidioides brasiliensis Pb01
Paulownia kawakamii
Penicillium chrysogenum Wisconsin 54-1255
Petroselinum crispum
Petunia hybrida
Phaeodactylum tricornutum
Phanerochaete chrysosporium
Phaseolus coccineus
Physcomitrella patens
Phytophthora ramorum
Phytophthora sojae
Picea abies
Picea glauca
Picea sitchensis
Pichia guilliermondii ATCC 6260
Pichia stipitis CBS 6054
Pimpinella brachycarpa
Pinus pinaster
Pinus radiata
Pinus taeda
Pisum fulvum
Pisum sativum
Plasmodium falciparum
Poncirus trifoliata
Populus trichocarpa
Prunus persica
Puccinia graminis f. sp. tritici CRL 75-36-700-3
Rattus norvegicus
Ricinus communis
Saccharomyces cerevisiae
Saccharomyces mikatae IFO 1815
Saccharomyces paradoxus NRRL Y-17217
Saccharum officinarum
Schizosaccharomyces japonicus yFS275
Schizosaccharomyces pombe 972h-
Secale cereale
Selaginella moellendorffii
Setaria italica
Silene diclinis
Sinapis alba
Solanum chilense
Solanum habrochaites
Sorghum bicolor
Sorghum propinquum
Sphagnum sp. JL-2005
Sporobolomyces roseus IAM 13481
Strongylocentrotus purpuratus
Thalassiosira pseudonana CCMP1335
Theobroma cacao
Tribolium castaneum
Trichoplax adhaerens
Triticum aestivum
Triticum monococcum
Ustilago maydis 521
Vicia species
Vitis vinifera
Volvox carteri f. nagariensis
Xenopus tropicalis
Yarrowia lipolytica CLIB122
Zea mays
Zygosaccharomyces rouxii CBS 732
2. Select Protein Classification
All
ABHF : Alpha_Beta Hydrolase Fold Super Family
Group V
Esterase_lipase Superfamily
Group I
Group III
Group IV
Group II
AGO : Argonaute gene family
ARID : ARID/BRIGHT DNA binding domain group
Plant Arid Group
Animal Arid Group
Tudor_RBB1NT Group
ARID2 group
ARID3 group
ARID5A_B group
ARP : Actin superfamily; actin-related proteins
Arp4_7 Superclass
Fungal Arp4 and 7 Groups
Plant and Animal ARP4 Class
Plant ARP7 Group
Arp1_2_3 Superclass
ARP2 Class
ARP3 Class
ARP1 Class
ARP5_6/AtARP8 Superclass
ARP5 Class
ARP6 Class
Plant ARP8 Class
ScARP8_9/AtARP9 Superclass
Fungal Specific Class
Sc ARP9 Class
Sc ARP8/At ARP9 Class
BRAT : Bromodomain-containing proteins containing AAA ATPase domains
BRD : Diverse bromodomain-containing proteins (polybromo1, yeast RSC, and human BRD homologs)
HsBRD8, BAZ1B group
yeast RSC group
RSC1/2 group (+ BAH domain)
RSC4 group (- BAH domain)
plant specific
with myb_DNA-binding domain
Impacted by sequence quality
no myb_DNA-binding domain
single domain group
HsBRD1, BRRF1, BRPF3 group
HsBRD7 and 9 group
Plant Bromodomain Group
Monocot specific group_BRD101
Monocot specific group_BRD102
AtBRD1 Group
BRD918 Group
AtBRD13 Group
HsFALZ, TRIM24, TRIM33 groups
HsFALZ group
HsSP140, TRIM24, TRIM33 group
HsZYMD11, PRKCBP1 group
SPT7 group
animal polybromo1 group
BRWD : Bromodomain-containing proteins containing WD40 domain repeats
CDPK : Cyclin-dependent protein kinase
CHB : SWI/SNF and RSC chromatin remodeling complex proteins (Swi3 and Rsc8 homologs)
ARATH SWI3D Group
SWI3_RSC8 Group
SACCE_Rsc8 Group
Animal Swi3/Rsc8 homologs
SACCE_Swi3 Group
Fungal Swi3/Rsc8 Homologs
ARATH SWI3A Group
ARATH SWI3C Group
ARATH SWI3B Group
CHC : SWI/SNF and RSC chromatin remodeling complex proteins (Swp73 and Rsc6 homologs)
Fungal ScUAF Group
SMARD/SWP73/RSC6 group
CHE : SWI/SNF chromatin remodeling complex proteins (Snf5 homologs)
SNF5_animals
Fungal Snf5 Homologs
SNF5_plants
Fungal SFH1 Homologs
CHR : SNF2 super family (Snf2, Ris1, Rad26 superclasses)
RIS1 Superclass
RAD5 class
ARATH_32 Group
ARATH_29 Group
Fungal specific clade
RIS1 class
Sc_RIS Group
Filamentous fungi group
Ris_odds
CHR27_CHR28 Group
CHR30_CHR33 Group
CHR36/39 class
CHR39 class
CHR36 class
DNA_methylase
RAD16 class
SMARCA3 class
Lodestar class
RAD26 Superclass
DRD1 class
CHR31 group
DRD subclass
CHR38 group
HARP class
ARATH_18 Group
ARATH_14 Group
RAD54 class
Group C3a
Group C3b
RAD26 class
RAD26-like subclass
CHR24 subclass
RAD26 subclass
ATRX class
SNF2 Superclass
ISWI class
CHD class
CHD1 subclass
HOMSA_CHDL and ARATH_CHR10 sublcass
Mi2 subclass
Animal Mi-2 Subgroup
Monocot chromodomain group
Fungal group; similarity to animal Mi-2 subgroup
CHR4 Group
PKL Group
Kismet subclass
MOM group
TafII170/MOT class
SNF2 class
Plant SNF2 homologs
Animal Brahma Group
Plant ARATH SYD Group
Algal Snf2 Group
Plant ARATH UBC6 Group
Yeast Sth1 Group
Stramenopile Snf2 Group
Yeast Snf2 Group
Fungal Snf2/Sth1 Group
SNF2 odds
DDM/LSH class
FSI class
SWR1 subclass
INO80 subclass
FUN30/ETL subclass
CONS : Flowering control-associated proteins; CONSTANS group
CPC : Condensin complex component; SMC protein group
CPD : Condensin complex component, non-SMC subunit (Cnd1 homologs)
CPG : Condensin complex component, non-SMC subunit
CPH : Condensin complex component; Barren domain-containing, non-SMC subunit
CPuORF : Conserved Peptide Upstream Open Reading Frame (CPuORF) Transcripts
MOAJ : CPuORF HG10; mORF: MAP kinase, PPC family 4.5.1
MOAR : CPuORF HG18; mORF: HSF-like transcription factor TBF1/HsfB1
MOAS : CPuORF HG19; mORF: Histidine-rich protein HIRP1
MOAT : CPuORF HG20; mORF: Unknown protein
MOAU : CPuORF HG21; mORF: ERF/CRF-type AP2 transcription factor
MOAV : CPuORF HG22; mORF: Ubiquitin-specific protease family, C19-related
MOAW : CPuORF HG23; mORF: MAP kinase, PPC family 4.1.5, WNK8/10 subfamily
MOAX : CPuORF HG24; mORF: PD-(D/E)XK nuclease
MOAY : CPuORF HG25; mORF: GRIK/SNAK calcium response protein kinases
MOAZ : CPuORF HG26; mORF: RING finger protein, E3 ubiquitin ligase
MOBC : CPuORF HG29; mORF: Dicarboxylate carrier protein
MOBD : CPuORF HG27; mORF: CBL-interacting protein kinase, CIPK6 subfamily
MOBB : CPuORF HG30; mORF: Adenylate cyclase
MOAP : CPuORF HG16; mORF: MAP kinase, PPC family 4.1.5, WNK5 subfamily
MOAO : CPuORF HG15; mORF: bHLH transcription factors, SAC51 subfamily
MOAA : CPuORF HG1; mORF: S1-group bZIP transcriptiion factor
MOAB : CPuORF HG2; mORF: bHLH transcription factor, LHW subfamily
MOAC : CPuORF HG3; mORF: S-adenosylmethionine decarboxylase
MOAD : CPuORF HG4; mORF: MADS-box, MIKC-C type, transcription factor
MOAE : CPuORF HG5; mORF: Ankyrin repeats protein
MOAG : CPuORF HG7; mORF: Translation initiation factor eIF5
MOAF : CPuORF HG6; mORF: Polyamine oxidase
MOAH : CPuORF HG8; mORF: TGF-beta superfamily; Mic-1 (GDF15) putative ortholog
MOAI : CPuORF HG9; mORF: Cysteine-rich protein
MOAL : CPuORF HG12; mORF = unknown protein
MOAM : CPuORF HG13; mORF: Phosphoethanolamine N-methyltransferase
MOAN : CPuORF HG14; mORF: HDZip class I transcription factors
MOBA : CPuORF HG28; F-box/kelch-repeat protein
CRD : Diverse group of chromodomain-containing proteins
CYCA : Cyclin family protein group A
DCL : Dicer-Like group
ARATH_DCL3 Group
DKSB : DEK_C N Terminal Domain Proteins
DMT : DNA methyltransferases
DNMT Class (CpG/CpnpG)
DNMT1 class (CpG)
Yeast Specific DMT
CMT1 class (CpNpG)
DNMT2 class (CpNpN;RNA-guided)
DRM class
DNMT3 class
DNG : Superfamily of DNA glycosylases
Ros/Demeter Group
DOTS : Nucleosomal histone H3-Lys79 methylase (Dot1 homologs)
DRB : Double stranded RNA-Binding protein group
DRSH : Animal-specific class II Ribonuclease III proteins (Drosho homologs)
EBP : BAH-PHD domain-containing protein group
ELF : Transcription Elongation Factor (Elf1 homologs)
EPL : Enhancer of Polycomb-like protein group [E(Pc) homologs]
ERI : Enhanced RNA interference
FGP : Flowering control-associated proteins; FRIGIDA group
FLCP : Flowering control-associated proteins
FLT : Flowering control-associated proteins; FLT group
FSHAT : Fungal-specific histone acetyltransferase
GTA : Transcription elongation-nucleosome displacement proteins (Spt5 homologs)
GTB : Transcription elongation-nucleosome displacement proteins (Spt6 homologs)
GTC : Global transcription factor group C (Spt16 homologs)
GTD : Global transcription factor group C (Spt3 homologs)
GTE : Global transcription factor group E (Bdf1, BRD4 and BRD2 (RING3) homologs)
Animal, fungi
Plant Clades
Plant Clades 2
Plant Clades 3
Plant Clades 1
GTG : Transcription elongation-nucleosome displacement proteins (Spt4 homologs)
GTI : Global transcription factor group I (Spt2 homologs)
HAC : Histone acetyltransferases [CREBBP (CBP) family]
HAC2 Group
HAF : TATA Box Binding Protein Associated Factors (TAF1 Homologs)
HAG : Histone acetyltransferases (GNAT superfamily)
HAT1 Family
ELP3 Family
HPA2/HPA3 Subfamily
ELP3 Subfamily
GCN5 Family
HAM : Histone acetyltransferases (MYST family)
ESA1
SAS2 group
SAS3 group
HAM1_2 group
HCP : Sin3 complex components (SAP18 homologs)
HDA : Histone deacetylases (Rpd3/HDA1 superfamily)
HDA14 Group
Class II RPD3 Family
Class III RPD3 Family
Class I RPD3 Family
Hos3 Group
HsHdac8 Group (HDA508)
HDA8 Group
HOS1 Group
HDHD : Haloacid dehalogenase-like hydrolase domain-containing protein
HDMA : Histone demethylases (AOF2/ LSD1 homologs)
ARATH_LDL1 Group
ARATH_LDL4 Group
ARATH_LDL2 Group
AOF2/ LSD1 homologs
ARATH_FLD Group
HDT : Histone deacetylases (plant-specific HD2 family)
HEN : HUA Enhancer
HFO : Histone H4
HIRA : HIRA protein group
HMGA : High Mobility Group Family A
HMGB : High Mobility Group Family B
Structure-specific recognition protein
Arid Domain Group
Plant-specific, single HMG box domain Group
HMTA : Set1 complex component (Ash2/Bre2 homologs)
HON : Histone H1 linker protein
ARATH HON1 Group
ARATH HON3 Group
HSC : Histone chaperone for Htz1p/H2A-H2B dimer
HTA : Histone H2A Family
Histone Variants
MacroH2A histones
H2A variant
Core
HTB : Histone H2B
HTR : Histone H3 Family
Histone Variants
Core
HUPA : Histone ubiquitination proteins group A (Bre1 homologs)
HUPB : Histone ubiquitination proteins group B (Rad6 homologs)
HXA : Histone acetyltransferase complex component (Ada2 homologs)
HXB : Histone acetyltransferase complex component (Ada3 homologs)
INGF : Inhibitor of Growth protein group (ING1-5 homologs)
JMJ : Jumonji domain group
jmjN_jmjC Family
Plant Specific FYRN_FYRC Group
Jarid Group
Jarid2 Subgroup (transcription repressors)
Jarid1 Subgroup (H3K4 histone demethylases)
Plant Specific Zinc Finger
C2H2 zinc finger
C5HC2 zinc finger
Jmjd2 Group
jmjC Family
JmjD1 Group
JMJD4 Group
HSPB Group
Yeast ECM5 Family
PHF8 (plant homeodomain finger protein 8) Group
JHDM1 Group (H3K36 histone demethylases)
JMJD3 group
KELP : KELP Protein Group
LFY : Flowering control-associated proteins; LFY group
MBD : Methyl binding domain proteins
ARATH MBD10_MBD11 Group
ARATH MBD1_MBD4 Group
Bromodomain group
HOMSA_BAZ2 Group
HOMSA MBD4 Group
MECP2 Group
ARATH MBD5_MBD6 Group
ARATH_MBD2 Group
HOMSA MBD5_MBD6 Group
Animal MBD1_MBD2_MBD3 Group
HOMSA MBD2_MBD3 Group
MBD1 Group
MBTI : MADS-box Type I group
MED10SUB : Mediator of RNA polymerase II transcription subunit 10
MED11SUB : Mediator of RNA polymerase II transcription subunit 11
MED12SUB : Mediator of RNA polymerase II transcription subunit 12
MED13SUB : Mediator of RNA polymerase II transcription subunit 13
MED14SUB : Mediator of RNA polymerase II transcription subunit 14
MED15SUB : Mediator of RNA polymerase II transcription subunit 15
MED16SUB : Mediator of RNA polymerase II transcription subunit 16
MED17SUB : Mediator of RNA polymerase II transcription subunit 17
MED18SUB : Mediator of RNA polymerase II transcription subunit 18
MED19SUB : Mediator of RNA polymerase II transcription subunit 19
MED1SUB : Mediator of RNA polymerase II transcription subunit 1
MED20SUB : Mediator of RNA polymerase II transcription subunit 20
MED21SUB : Mediator of RNA polymerase II transcription subunit 21
MED22SUB : Mediator of RNA polymerase II transcription subunit 22
MED23SUB : Mediator of RNA polymerase II transcription subunit 23
MED24SUB : Mediator of RNA polymerase II transcription subunit 24
MED25SUB : Mediator of RNA polymerase II transcription subunit 25
MED26SUB : Mediator of RNA polymerase II transcription subunit 26
MED27SUB : Mediator of RNA polymerase II transcription subunit 27
MED28SUB : Mediator of RNA polymerase II transcription subunit 28
MED29SUB : Mediator of RNA polymerase II transcription subunit 29
MED2SUB : Mediator of RNA polymerase II transcription subunit 2
MED30SUB : Mediator of RNA polymerase II transcription subunit 30
MED31SUB : Mediator of RNA polymerase II transcription subunit 31
MED3SUB : Mediator of RNA polymerase II transcription subunit 3
MED4SUB : Mediator of RNA polymerase II transcription subunit 4
MED5SUB : Mediator of RNA polymerase II transcription subunit 5
MED6SUB : Mediator of RNA polymerase II transcription subunit 6
MED7SUB : Mediator of RNA polymerase II transcription subunit 7
MED8SUB : Mediator of RNA polymerase II transcription subunit 8
MED9SUB : Mediator of RNA polymerase II transcription subunit 9
MOAA : CPuORF HG1; mORF: S1-group bZIP transcriptiion factor
MOAB : CPuORF HG2; mORF: bHLH transcription factor, LHW subfamily
MOAC : CPuORF HG3; mORF: S-adenosylmethionine decarboxylase
MOAD : CPuORF HG4; mORF: MADS-box, MIKC-C type, transcription factor
MOAE : CPuORF HG5; mORF: Ankyrin repeats protein
MOAF : CPuORF HG6; mORF: Polyamine oxidase
MOAG : CPuORF HG7; mORF: Translation initiation factor eIF5
MOAH : CPuORF HG8; mORF: TGF-beta superfamily; Mic-1 (GDF15) putative ortholog
MOAI : CPuORF HG9; mORF: Cysteine-rich protein
MOAJ : CPuORF HG10; mORF: MAP kinase, PPC family 4.5.1
MOAL : CPuORF HG12; mORF = unknown protein
MOAM : CPuORF HG13; mORF: Phosphoethanolamine N-methyltransferase
MOAN : CPuORF HG14; mORF: HDZip class I transcription factors
MOAO : CPuORF HG15; mORF: bHLH transcription factors, SAC51 subfamily
MOAP : CPuORF HG16; mORF: MAP kinase, PPC family 4.1.5, WNK5 subfamily
MOAR : CPuORF HG18; mORF: HSF-like transcription factor TBF1/HsfB1
MOAS : CPuORF HG19; mORF: Histidine-rich protein HIRP1
MOAT : CPuORF HG20; mORF: Unknown protein
MOAU : CPuORF HG21; mORF: ERF/CRF-type AP2 transcription factor
MOAV : CPuORF HG22; mORF: Ubiquitin-specific protease family, C19-related
MOAW : CPuORF HG23; mORF: MAP kinase, PPC family 4.1.5, WNK8/10 subfamily
MOAX : CPuORF HG24; mORF: PD-(D/E)XK nuclease
MOAY : CPuORF HG25; mORF: GRIK/SNAK calcium response protein kinases
MOAZ : CPuORF HG26; mORF: RING finger protein, E3 ubiquitin ligase
MOBA : CPuORF HG28; F-box/kelch-repeat protein
MOBB : CPuORF HG30; mORF: Adenylate cyclase
MOBC : CPuORF HG29; mORF: Dicarboxylate carrier protein
MOBD : CPuORF HG27; mORF: CBL-interacting protein kinase, CIPK6 subfamily
MRG : MRG domain-containing proteins
NFA : Nucleosome/chromatin assembly complex proteins (Nap1 homologs)
NAP1 Class
SET translocation (myeloid leukemia-associated) Cl
NFB : Nucleosome/chromatin assembly complex proteins (Cac2 homologs)
NFC : NURF complex component (RBBP4/Caf1 homologs)
Yeast MSI1
NFC4_5 group
NFC1_2_3 group
NFE : Nucleosome positioning into regularly spaced arrays (Acf1 homologs)
NFF : Nucleosome/chromatin assembly complex proteins (Cac1 homologs)
NRPDA : RNA Polymerase IV Large Subunit
NRPDB : RNA Polymerase IV Small Subunit
PAFA : PAF1 complex protein (Paf1 homologs)
PAFB : PAF1 complex protein (Leo1 homologs)
PAFC : PAF1 complex protein (Ctr9 homologs)
PAFD : PAF1 complex protein (Rtf1 homologs)
PAFE : PAF1 complex protein (Cdc73 homologs)
PATPA : Proteasomal ATPases; Group A
PATPB : Proteasomal ATPases; Group B
PGE : Polycomb group (esc homologs)
PRMT : Protein arginine methyltransferases
PRMT3
PRMT6
PRMT1
PRMT5
CARM1
PRMT7
RDR : RNA-dependent RNA polymerases
RHEL : RNA helicases
RTTHC : Rtt106 histone chaperones
RUVBL : eukaryotic homologs of the bacterial DNA-dependent ATPase and helicase RuvB
RVB2 like proteins
RVB1 like proteins
SDG : SET domain proteins
SET Domain Protein Superclass A
KMT_H3K4
SETD7 Group
ARATH_ATX1 (SDG27) Group
ARATH_ATX4/5 Group
SET1 Group
ARATH_ATXR7 Group
SDG732 Group
TRR_TRX
KMT_H3K9 [Su(var)3-9]
Diverse Su(var)39 Group
ARATH_SUVR5 Group
HOMSA_SETD Group
HOMSA_EHMT Group (Ga9)
ARATH_SUVR3 Group
CLR4/SUV39H1 Group
ARATH_SUVR4 Group
CAEEL-specific SuVar39 Group
ARATH_SUVH Group
SUVH1/SUVH3 Group
ARATH_SUVH5/SUVH6 Group
ARATH_Kryptonite Group
ARATH_SUVH2/SUVH9 Group
Animal SETMAR group
KMT_H3K27 (Enhancer of zeste Group)
ARATH_EZA1 Group
ARATH_CLF Group
Fungal group; similarity to Enhancer of Zeste Proteins
KMT_H3K36 (SET2/SETD2/ASH) Group)
ASH1 Group
SET2 Group
SET2/SETD2 Subgroup
ARATH_EFS Group
NSD1
ARATH_ASHH1 Group
KMT_H4K20 (PR-Set7/8)
SET Domain Protein Superclass B
RuBisCO LSMT
ARATH_ATXR5 Group
SACCE_SET3 Group
S-ET interrupted and unclassified
SMYD Group
Suv420
S-ET interrupted
SET5
SACCE_SET7 Family
SGA : Nucleosome assembly factor (ASF1 homologs)
SGS : Suppressor of gene silencing
SMH : Single myb histone protein group
SNT : Histone deacetylase complex protein (Sin3 homologs)
SRT : Histone deacetylases (SIR2 family)
Class III
Class II
Class IV
Class I
group 2
group 3
group 1
SSC : SAS4 protein group (yeast-specific)
SSRP : Histone chaperone (Pob3 and SSRP homologs; FACT complex proteins)
SWDA : COMPASS (Set1C) complex protein (SWD1 homologs)
SWDB : COMPASS (Set1C) complex protein (SWD2 homologs)
SWDB2 Group
SWDB1 Group
SWDC : COMPASS (Set1C) complex protein (SWD3 homologs)
SWDC2 Group
SWDC1 Group
SWRCA : SWR complex proteins (SWC4 homlogs)
TAFEI : TATA Box Binding Protein Associated Factors (TAF8 Homologs)
TAFEL : TATA Box Binding Protein Associated Factors (TAF11 Homologs)
TAFFF : TATA Box Binding Protein Associated Factors (TAF15 Homologs)
TAFFN : TATA Box Binding Protein Associated Factors (TAF14 Homologs)
TAFFO : TATA Box Binding Protein Associated Factors (TAF4 Homologs)
TAFNI : TATA Box Binding Protein Associated Factors (TAF9 Homologs)
TAFSV : TATA Box Binding Protein Associated Factors (TAF7 Homologs)
TAFSX : TATA Box Binding Protein Associated Factors (TAF6 Homologs)
TAFTE : TATA Box Binding Protein Associated Factors (TAF10 Homologs)
TAFTH : TATA Box Binding Protein Associated Factors (TAF3 Homologs)
TAFTN : TATA Box Binding Protein Associated Factors (TAF13 Homologs)
TAFTV : TATA Box Binding Protein Associated Factors (TAF12Homologs)
TAFTW : TATA Box Binding Protein Associated Factors (TAF2 Homologs)
TAFV : TATA Box Binding Protein Associated Factors (TAF5 Homologs)
TF2S : transcription elongation factor TFIIS
TUP : TUP1 Family of Transcription Repressors (fungal-specific) with a proposed role in chromatin remodeling
VEF : VEF Family (VRN2, EMF2, FIS2)
VIM : Variant in Methylation
VPGA : Flowering control-associated proteins (VRN1 homologs)
VPGB : Flowering control-associated proteins (VIN3 homologs)
YDG : Yeats Domain Proteins
GAS41
SAS5
YEATS2 Group
Yeast YAF9 Group
3. Select protein domain from the box
pfam
smart
7tm_1
A1pp
A_deamin
AAA
ABC_membrane
ABC_tran
Abhydrolase_1
Abhydrolase_3
Abhydrolase_6
ACBP
Acetyltransf_1
Actin
Acyl_CoA_thio
Acyltransferase
Aldo_ket_red
Amino_oxidase
AMP-binding
Ank
Anti-silence
AP2
APH
ARID
ASF1_hist_chap
AT_hook
ATG16
Auxin_resp
AXH
B3
BAH
Barren
BRCT
BRE1
Bromo_TP
Bromodomain
BTB
bZIP_1
C1_1
Cadherin
CBF
CBFD_NFYB_HMF
CCT
CDC73
CH
CHDCT2
CHDNT
Chromo
Chromo_shadow
CHZ
cNMP_binding
Collagen
CPSF_A
CPSF_A
CRC_subunit
Creb_binding
CTNNB1_binding
Cullin
CXC
Cyclase
DDT
DEAD
DEK_C
DLH
DMAP1
DMAP_binding
DNA_methylase
DNA_mis_repair
DnaJ
DOT1
DSBA
dsrm
dsRNA_bind
DUF1086
DUF1087
DUF1278
DUF1423
DUF1546
DUF1605
DUF1640
DUF1777
DUF1785
DUF218
DUF572
DUF59
DUF592
DUF902
DUF906
DZF
E_Pc_C
ECH
efhand
eIF2_C
Elf1
ELM2
EMP24_GP25L
ERCC4
ETC_C1_NDUFA5
Exonuc_X-T
F-box
FKBP_C
FLO_LFY
fn3
Frigida
FYRC
FYRN
GAGA
Gal_Lectin
GATA
Gly-rich_Ago1
Glyco_hydro_1
Glyco_hydro_72
Glycos_transf_1
Glycos_transf_2
GRP
GTP_EFTU
GTP_EFTU_D2
GYF
HA2
HAND
HARP
HATPase_c
HDAC_interact
HEAT
Helicase_C
HHH
HhH-GPD
Hira
HIRAN
Hist_deacetyl
Histone
HMG_box
HNH
HSA
HSP20
IMS
IQ
JmjC
JmjN
K-box
Kelch_1
KIX
KOW
Ku
Ku_C
Ku_N
Lectin_C
Leo1
Linker_histone
LisH
Macro
MBD
Med29
Methyltransf_11
Methyltransf_12
MFS_1
MORN
MOZ_SAS
MRG
MTS
Myb_DNA-binding
NAF
NAF
NAF
NAP
NB-ARC
NFA
Nop10p
Not1
Nucleoplasmin
NUDIX
OGG_N
OS-D
Oxysterol_BP
PAD
PAD_M
PAD_N
PADR1
Paf1
PAH
PALP
PARP
PARP_reg
PAZ
PBP
PCAF_N
Peptidase_C2
Peptidase_M24
PH
PHD
PI3_PI4_kinase
Piwi
Pkinase
Pkinase_Tyr
PLU-1
Plus-3
PPR
PQQ
Pre-SET
PRMT5
PWWP
QLQ
Rad21_Rec8
Rad21_Rec8_N
Rad54_N
Radical_SAM
Ras
RB_A
RB_B
Rb_C
RBB1NT
RdRP
ResIII
Retrotrans_gag
RFX_DNA_binding
Ribonuclease_3
Ribosomal_L7Ae
Ribosomal_L7Ae
RIO1
RNA_pol_Rpb1_1
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_5
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
RNA_pol_Rpb2_6
RNA_pol_Rpb2_7
RRM_1
Rtt106
Rubis-subs-bind
rve
RVP_2
RVT_1
RVT_2
S1
SAM_1
SAND
SAP
SAP18
Sec1
Sec7
SET
SH2
SIR2
SLIDE
SMC_hinge
SMC_N
SNF2_assoc
SNF2_N
SNF5
Sp100
SPK
SPRY
SPT16
SPT2
Spt4
Spt5-NGN
Spt5_N
SRF-TF
SRI
SRI_2
SSrecog
SUI1
Supt5
Swi5
SWIB
SWIM
SWIRM
TAF
TAF4
TAF8_C
TBP
TBP-binding
TCH
TFIID_90kDa
THAP
TIP49
TPR_1
TPR_2
TTL
Tup_N
UBA
ubiquitin
UPF0020
UQ_con
UvdE
UVR
VEFS-Box
WAC_Acf1_DNA_bd
WD40
WGR
WRC
WW
XS
YDG_SRA
YEATS
z-alpha
zf-B_box
zf-C2H2
zf-C2HC
zf-C3HC4
zf-C5HC2
zf-CCCH
zf-CCHC
zf-CW
zf-CXXC
zf-GRF
zf-H2C2
zf-HIT
zf-MYND
zf-PARP
zf-TAZ
zf-Tim10_DDP
zf-UBP
zf-XS
ZZ
Optional: Include extra amino acids flanking the domain
0
5
10
15
20
50
100
200
250
300
350
300
400
500
both
5'
3'