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Select both the taxon and protein classification or Enter ChromDB IDs and locus numbers

1. Select organisms (hold Ctl to select multiple) (or Select Taxon)

All Acorus americanus Aedes aegypti Aegilops speltoides Agapanthus praecox Ajellomyces capsulatus NAm1 Allium cepa Allium sativum Amborella trichopoda Anopheles gambiae str. PEST Antirrhinum majus Apis mellifera Apium graveolens Aquilegia alpina Aquilegia coerulea Aquilegia formosa x Aquilegia pubescens Arabidopsis lyrata Arabidopsis thaliana Arachis hypogaea Aranda deborah Ascobolus immersus Ashbya gossypii ATCC 10895 Asparagus officinalis Asparagus virgatus Aspergillus clavatus NRRL 1 Aspergillus flavus NRRL3357 Aspergillus fumigatus Aspergillus nidulans FGSC A4 Aspergillus niger CBS 513.88 Aspergillus oryzae RIB40 Aspergillus terreus NIH2624 Avena sativa Batrachochytrium dendrobatidis JEL423 Beta vulgaris Bos taurus Botryotinia fuckeliana B05.10 Brachypodium distachyon Brassica napus Brassica oleracea Caenorhabditis elegans Callitropsis nootkatensis Canavalia gladiata Candida albicans Candida glabrata CBS 138 Candida lusitaniae ATCC 42720 Candida tropicalis MYA-3404 Canis familiaris Capitella sp.1 Capsella rubella Capsicum annuum Carica papaya Castanea mollissima Ceratopteris richardii Chaetomium globosum CBS 148.51 Chlamydomonas reinhardtii Cicer arietinum Ciona intestinalis Citrus clementina Citrus sinensis Coccidioides immitis RS Coccidioides posadasii RMSCC 3488 Coffea arabica Coffea canephora Coprinus cinereus okayama7#130 Cryptococcus neoformans var. neoformans JEC21 Cryptosporidium parvum Cucumis sativus Cyanidioschyzon merolae strain 10D Cycas rumphii Danio rerio Daucus carota Debaryomyces hansenii CBS767 Dendrobium grex Madame Thong-In Dictyostelium discoideum AX4 Dictyostelium purpureum Drosophila melanogaster Drosophila pseudoobscura pseudoobscura Ectocarpus siliculosus Elaeis guineensis Emiliania huxleyi CCMP1516 Equus caballus Eschscholzia californica Eucalyptus globulus subsp. globulus Eucalyptus grandis Eucalyptus occidentalis Euphorbia esula Eutrema halophilum Festuca pratensis Fragaria x ananassa Fritillaria agrestis Fritillaria liliacea Fusarium oxysporum f. sp. lycopersici Gallus gallus Gerbera hybrid cultivar Gibberella moniliformis 7600 Gibberella zeae PH-1 Glycine max Glycine soja Gnetum gnemon Gossypium arboreum Gossypium hirsutum Helianthus annuus Homo sapiens Hordeum vulgare Hyacinthus orientalis Ipomoea batatas Ipomoea nil Ipomoea trifida Kluyveromyces lactis NRRL Y-1140 Laccaria bicolor Lactuca sativa Lactuca serriola Lathyrus aphaca Lathyrus sativus Lens culinaris Lilium longiflorum Linum usitatissimum Liriodendron tulipifera Lodderomyces elongisporus NRRL YB-4239 Lolium multiflorum Lolium perenne Lolium temulentum Lotus japonicus Lupinus albus Lycopodium annotinum Macaca mulatta Magnaporthe oryzea 70-15 Magnolia praecocissima Malus x domestica Manihot esculenta Medicago sativa Medicago truncatula Mesembryanthemum crystallinum Micromonas pusilla CCMP1545 Micromonas pusilla NOUM17 Mimulus guttatus Monodelphis domestica Monosiga brevicollis Mus musculus Musa acuminata Musa balbisiana Nectria haematococca Neurospora crassa OR74A Nicotiana benthamiana Nicotiana tabacum Ornithorhynchus anatinus Oryza sativa (indica cultivar-group) Oryza sativa ssp. japonica Ostreococcus lucimarinus Ostreococcus sp. RCC809 Ostreococcus tauri Pan troglodytes Panicum virgatum Paracoccidioides brasiliensis Pb01 Paulownia kawakamii Penicillium chrysogenum Wisconsin 54-1255 Petroselinum crispum Petunia hybrida Phaeodactylum tricornutum Phanerochaete chrysosporium Phaseolus coccineus Physcomitrella patens Phytophthora ramorum Phytophthora sojae Picea abies Picea glauca Picea sitchensis Pichia guilliermondii ATCC 6260 Pichia stipitis CBS 6054 Pimpinella brachycarpa Pinus pinaster Pinus radiata Pinus taeda Pisum fulvum Pisum sativum Plasmodium falciparum Poncirus trifoliata Populus trichocarpa Prunus persica Puccinia graminis f. sp. tritici CRL 75-36-700-3 Rattus norvegicus Ricinus communis Saccharomyces cerevisiae Saccharomyces mikatae IFO 1815 Saccharomyces paradoxus NRRL Y-17217 Saccharum officinarum Schizosaccharomyces japonicus yFS275 Schizosaccharomyces pombe 972h- Secale cereale Selaginella moellendorffii Setaria italica Silene diclinis Sinapis alba Solanum chilense Solanum habrochaites Sorghum bicolor Sorghum propinquum Sphagnum sp. JL-2005 Sporobolomyces roseus IAM 13481 Strongylocentrotus purpuratus Thalassiosira pseudonana CCMP1335 Theobroma cacao Tribolium castaneum Trichoplax adhaerens Triticum aestivum Triticum monococcum Ustilago maydis 521 Vicia species Vitis vinifera Volvox carteri f. nagariensis Xenopus tropicalis Yarrowia lipolytica CLIB122 Zea mays Zygosaccharomyces rouxii CBS 732

2. Select a protein group (hold Ctl to select multiple) (or Select Classification)

All ABHF: Alpha_Beta Hydrolase Fold Super Family AGO: Argonaute gene family ARID: ARID/BRIGHT DNA binding domain group ARP: Actin superfamily; actin-related proteins BRAT: Bromodomain-containing proteins containing AAA ATPase domains BRD: Diverse bromodomain-containing proteins (polybromo1, yeast RSC, and human BRD homologs) BRWD: Bromodomain-containing proteins containing WD40 domain repeats CDPK: Cyclin-dependent protein kinase CHB: SWI/SNF and RSC chromatin remodeling complex proteins (Swi3 and Rsc8 homologs) CHC: SWI/SNF and RSC chromatin remodeling complex proteins (Swp73 and Rsc6 homologs) CHE: SWI/SNF chromatin remodeling complex proteins (Snf5 homologs) CHR: SNF2 super family (Snf2, Ris1, Rad26 superclasses) CONS: Flowering control-associated proteins; CONSTANS group CPC: Condensin complex component; SMC protein group CPD: Condensin complex component, non-SMC subunit (Cnd1 homologs) CPG: Condensin complex component, non-SMC subunit CPH: Condensin complex component; Barren domain-containing, non-SMC subunit CPuORF: Conserved Peptide Upstream Open Reading Frame (CPuORF) Transcripts CRD: Diverse group of chromodomain-containing proteins CYCA: Cyclin family protein group A DCL: Dicer-Like group DKSB: DEK_C N Terminal Domain Proteins DMT: DNA methyltransferases DNG: Superfamily of DNA glycosylases DOTS: Nucleosomal histone H3-Lys79 methylase (Dot1 homologs) DRB: Double stranded RNA-Binding protein group DRSH: Animal-specific class II Ribonuclease III proteins (Drosho homologs) EBP: BAH-PHD domain-containing protein group ELF: Transcription Elongation Factor (Elf1 homologs) EPL: Enhancer of Polycomb-like protein group [E(Pc) homologs] ERI: Enhanced RNA interference FGP: Flowering control-associated proteins; FRIGIDA group FLCP: Flowering control-associated proteins FLT: Flowering control-associated proteins; FLT group FSHAT: Fungal-specific histone acetyltransferase GTA: Transcription elongation-nucleosome displacement proteins (Spt5 homologs) GTB: Transcription elongation-nucleosome displacement proteins (Spt6 homologs) GTC: Global transcription factor group C (Spt16 homologs) GTD: Global transcription factor group C (Spt3 homologs) GTE: Global transcription factor group E (Bdf1, BRD4 and BRD2 (RING3) homologs) GTG: Transcription elongation-nucleosome displacement proteins (Spt4 homologs) GTI: Global transcription factor group I (Spt2 homologs) HAC: Histone acetyltransferases [CREBBP (CBP) family] HAF: TATA Box Binding Protein Associated Factors (TAF1 Homologs) HAG: Histone acetyltransferases (GNAT superfamily) HAM: Histone acetyltransferases (MYST family) HCP: Sin3 complex components (SAP18 homologs) HDA: Histone deacetylases (Rpd3/HDA1 superfamily) HDHD: Haloacid dehalogenase-like hydrolase domain-containing protein HDMA: Histone demethylases (AOF2/ LSD1 homologs) HDT: Histone deacetylases (plant-specific HD2 family) HEN: HUA Enhancer HFO: Histone H4 HIRA: HIRA protein group HMGA: High Mobility Group Family A HMGB: High Mobility Group Family B HMTA: Set1 complex component (Ash2/Bre2 homologs) HON: Histone H1 linker protein HSC: Histone chaperone for Htz1p/H2A-H2B dimer HTA: Histone H2A Family HTB: Histone H2B HTR: Histone H3 Family HUPA: Histone ubiquitination proteins group A (Bre1 homologs) HUPB: Histone ubiquitination proteins group B (Rad6 homologs) HXA: Histone acetyltransferase complex component (Ada2 homologs) HXB: Histone acetyltransferase complex component (Ada3 homologs) INGF: Inhibitor of Growth protein group (ING1-5 homologs) JMJ: Jumonji domain group KELP: KELP Protein Group LFY: Flowering control-associated proteins; LFY group MBD: Methyl binding domain proteins MBTI: MADS-box Type I group MED10SUB: Mediator of RNA polymerase II transcription subunit 10 MED11SUB: Mediator of RNA polymerase II transcription subunit 11 MED12SUB: Mediator of RNA polymerase II transcription subunit 12 MED13SUB: Mediator of RNA polymerase II transcription subunit 13 MED14SUB: Mediator of RNA polymerase II transcription subunit 14 MED15SUB: Mediator of RNA polymerase II transcription subunit 15 MED16SUB: Mediator of RNA polymerase II transcription subunit 16 MED17SUB: Mediator of RNA polymerase II transcription subunit 17 MED18SUB: Mediator of RNA polymerase II transcription subunit 18 MED19SUB: Mediator of RNA polymerase II transcription subunit 19 MED1SUB: Mediator of RNA polymerase II transcription subunit 1 MED20SUB: Mediator of RNA polymerase II transcription subunit 20 MED21SUB: Mediator of RNA polymerase II transcription subunit 21 MED22SUB: Mediator of RNA polymerase II transcription subunit 22 MED23SUB: Mediator of RNA polymerase II transcription subunit 23 MED24SUB: Mediator of RNA polymerase II transcription subunit 24 MED25SUB: Mediator of RNA polymerase II transcription subunit 25 MED26SUB: Mediator of RNA polymerase II transcription subunit 26 MED27SUB: Mediator of RNA polymerase II transcription subunit 27 MED28SUB: Mediator of RNA polymerase II transcription subunit 28 MED29SUB: Mediator of RNA polymerase II transcription subunit 29 MED2SUB: Mediator of RNA polymerase II transcription subunit 2 MED30SUB: Mediator of RNA polymerase II transcription subunit 30 MED31SUB: Mediator of RNA polymerase II transcription subunit 31 MED3SUB: Mediator of RNA polymerase II transcription subunit 3 MED4SUB: Mediator of RNA polymerase II transcription subunit 4 MED5SUB: Mediator of RNA polymerase II transcription subunit 5 MED6SUB: Mediator of RNA polymerase II transcription subunit 6 MED7SUB: Mediator of RNA polymerase II transcription subunit 7 MED8SUB: Mediator of RNA polymerase II transcription subunit 8 MED9SUB: Mediator of RNA polymerase II transcription subunit 9 MOAA: CPuORF HG1; mORF: S1-group bZIP transcriptiion factor MOAB: CPuORF HG2; mORF: bHLH transcription factor, LHW subfamily MOAC: CPuORF HG3; mORF: S-adenosylmethionine decarboxylase MOAD: CPuORF HG4; mORF: MADS-box, MIKC-C type, transcription factor MOAE: CPuORF HG5; mORF: Ankyrin repeats protein MOAF: CPuORF HG6; mORF: Polyamine oxidase MOAG: CPuORF HG7; mORF: Translation initiation factor eIF5 MOAH: CPuORF HG8; mORF: TGF-beta superfamily; Mic-1 (GDF15) putative ortholog MOAI: CPuORF HG9; mORF: Cysteine-rich protein MOAJ: CPuORF HG10; mORF: MAP kinase, PPC family 4.5.1 MOAL: CPuORF HG12; mORF = unknown protein MOAM: CPuORF HG13; mORF: Phosphoethanolamine N-methyltransferase MOAN: CPuORF HG14; mORF: HDZip class I transcription factors MOAO: CPuORF HG15; mORF: bHLH transcription factors, SAC51 subfamily MOAP: CPuORF HG16; mORF: MAP kinase, PPC family 4.1.5, WNK5 subfamily MOAR: CPuORF HG18; mORF: HSF-like transcription factor TBF1/HsfB1 MOAS: CPuORF HG19; mORF: Histidine-rich protein HIRP1 MOAT: CPuORF HG20; mORF: Unknown protein MOAU: CPuORF HG21; mORF: ERF/CRF-type AP2 transcription factor MOAV: CPuORF HG22; mORF: Ubiquitin-specific protease family, C19-related MOAW: CPuORF HG23; mORF: MAP kinase, PPC family 4.1.5, WNK8/10 subfamily MOAX: CPuORF HG24; mORF: PD-(D/E)XK nuclease MOAY: CPuORF HG25; mORF: GRIK/SNAK calcium response protein kinases MOAZ: CPuORF HG26; mORF: RING finger protein, E3 ubiquitin ligase MOBA: CPuORF HG28; F-box/kelch-repeat protein MOBB: CPuORF HG30; mORF: Adenylate cyclase MOBC: CPuORF HG29; mORF: Dicarboxylate carrier protein MOBD: CPuORF HG27; mORF: CBL-interacting protein kinase, CIPK6 subfamily MRG: MRG domain-containing proteins NFA: Nucleosome/chromatin assembly complex proteins (Nap1 homologs) NFB: Nucleosome/chromatin assembly complex proteins (Cac2 homologs) NFC: NURF complex component (RBBP4/Caf1 homologs) NFE: Nucleosome positioning into regularly spaced arrays (Acf1 homologs) NFF: Nucleosome/chromatin assembly complex proteins (Cac1 homologs) NRPDA: RNA Polymerase IV Large Subunit NRPDB: RNA Polymerase IV Small Subunit PAFA: PAF1 complex protein (Paf1 homologs) PAFB: PAF1 complex protein (Leo1 homologs) PAFC: PAF1 complex protein (Ctr9 homologs) PAFD: PAF1 complex protein (Rtf1 homologs) PAFE: PAF1 complex protein (Cdc73 homologs) PATPA: Proteasomal ATPases; Group A PATPB: Proteasomal ATPases; Group B PGE: Polycomb group (esc homologs) PRMT: Protein arginine methyltransferases RDR: RNA-dependent RNA polymerases RHEL: RNA helicases RTTHC: Rtt106 histone chaperones RUVBL: eukaryotic homologs of the bacterial DNA-dependent ATPase and helicase RuvB SDG: SET domain proteins SGA: Nucleosome assembly factor (ASF1 homologs) SGS: Suppressor of gene silencing SMH: Single myb histone protein group SNT: Histone deacetylase complex protein (Sin3 homologs) SRT: Histone deacetylases (SIR2 family) SSC: SAS4 protein group (yeast-specific) SSRP: Histone chaperone (Pob3 and SSRP homologs; FACT complex proteins) SWDA: COMPASS (Set1C) complex protein (SWD1 homologs) SWDB: COMPASS (Set1C) complex protein (SWD2 homologs) SWDC: COMPASS (Set1C) complex protein (SWD3 homologs) SWRCA: SWR complex proteins (SWC4 homlogs) TAFEI: TATA Box Binding Protein Associated Factors (TAF8 Homologs) TAFEL: TATA Box Binding Protein Associated Factors (TAF11 Homologs) TAFFF: TATA Box Binding Protein Associated Factors (TAF15 Homologs) TAFFN: TATA Box Binding Protein Associated Factors (TAF14 Homologs) TAFFO: TATA Box Binding Protein Associated Factors (TAF4 Homologs) TAFNI: TATA Box Binding Protein Associated Factors (TAF9 Homologs) TAFSV: TATA Box Binding Protein Associated Factors (TAF7 Homologs) TAFSX: TATA Box Binding Protein Associated Factors (TAF6 Homologs) TAFTE: TATA Box Binding Protein Associated Factors (TAF10 Homologs) TAFTH: TATA Box Binding Protein Associated Factors (TAF3 Homologs) TAFTN: TATA Box Binding Protein Associated Factors (TAF13 Homologs) TAFTV: TATA Box Binding Protein Associated Factors (TAF12Homologs) TAFTW: TATA Box Binding Protein Associated Factors (TAF2 Homologs) TAFV: TATA Box Binding Protein Associated Factors (TAF5 Homologs) TF2S: transcription elongation factor TFIIS TUP: TUP1 Family of Transcription Repressors (fungal-specific) with a proposed role in chromatin remodeling VEF: VEF Family (VRN2, EMF2, FIS2) VIM: Variant in Methylation VPGA: Flowering control-associated proteins (VRN1 homologs) VPGB: Flowering control-associated proteins (VIN3 homologs) YDG: Yeats Domain Proteins

Acknowledgements: ChromDB was funded by a grant from the National Science Foundation Plant Genome Research Project(#DBI-0421679; PI Napoli). ChromDB is funded currently by a Mexican grant to R. Jorgensen via the Consejo Nacional de Ciencia y Tecnología (Conacyt). ChromDB server is hosted by the Biotechnology Computing Facility at the University of Arizona.
Design by Western Sky Communications