+
Non Chromatin Related Proteins (
259 proteins:
194 P,
25 A,
36 F )
+
ABHF : Alpha_Beta Hydrolase Fold Super Family (
259 proteins:
194 P,
25 A,
36 F )
Group V (
135 proteins:
71 P,
25 A,
35 F )
+
Esterase_lipase Superfamily (
124 proteins:
123 P,
0 A,
1 F )
Group I (
27 proteins:
26 P,
0 A,
1 F )
Group III (
27 proteins:
27 P,
0 A,
0 F )
Group IV (
31 proteins:
31 P,
0 A,
0 F )
Group II (
38 proteins:
38 P,
0 A,
0 F )
+
Unclassified (
75 proteins:
56 P,
0 A,
17 F )
KELP : KELP Protein Group (
10 proteins:
10 P,
0 A,
0 F )
DKSB : DEK_C N Terminal Domain Proteins (
65 proteins:
46 P,
0 A,
17 F )
+
Histones and Histone Linker Proteins (
1745 proteins:
1125 P,
190 A,
219 F )
+
Core and Histone Variants (
1183 proteins:
657 P,
137 A,
200 F )
+
HTR : Histone H3 Family (
411 proteins:
208 P,
45 A,
90 F )
Histone Variants (
10 proteins:
1 P,
4 A,
1 F )
Core (
370 proteins:
190 P,
36 A,
81 F )
+
HTA : Histone H2A Family (
377 proteins:
207 P,
58 A,
59 F )
+
Histone Variants (
134 proteins:
75 P,
18 A,
26 F )
MacroH2A histones (
13 proteins:
5 P,
3 A,
0 F )
H2A variant (
7 proteins:
6 P,
0 A,
1 F )
Core (
235 proteins:
131 P,
40 A,
27 F )
HFO : Histone H4 (
190 proteins:
114 P,
18 A,
23 F )
HTB : Histone H2B (
205 proteins:
128 P,
16 A,
28 F )
+
Linker Histone Domain Proteins (
562 proteins:
468 P,
53 A,
19 F )
HMGA : High Mobility Group Family A (
107 proteins:
99 P,
6 A,
0 F )
SMH : Single myb histone protein group (
144 proteins:
144 P,
0 A,
0 F )
+
HON : Histone H1 linker protein (
311 proteins:
225 P,
47 A,
19 F )
ARATH HON1 Group (
162 proteins:
160 P,
0 A,
2 F )
ARATH HON3 Group (
54 proteins:
54 P,
0 A,
0 F )
+
Nucleosome Organization: Assembly and Displacement (
8233 proteins:
3840 P,
773 A,
2800 F )
+
Nucleosome Assembly (Chaperones) (
826 proteins:
386 P,
121 A,
248 F )
+
NFA : Nucleosome/chromatin assembly complex proteins (Nap1 homologs) (
295 proteins:
149 P,
77 A,
53 F )
NAP1 Class (
172 proteins:
92 P,
33 A,
35 F )
SET translocation (myeloid leukemia-associated) Cl (
110 proteins:
53 P,
40 A,
13 F )
NFE : Nucleosome positioning into regularly spaced arrays (Acf1 homologs) (
76 proteins:
40 P,
5 A,
27 F )
NFF : Nucleosome/chromatin assembly complex proteins (Cac1 homologs) (
64 proteins:
38 P,
5 A,
16 F )
NFB : Nucleosome/chromatin assembly complex proteins (Cac2 homologs) (
83 proteins:
33 P,
5 A,
34 F )
HIRA : HIRA protein group (
106 proteins:
38 P,
5 A,
51 F )
RTTHC : Rtt106 histone chaperones (
7 proteins:
0 P,
0 A,
7 F )
HSC : Histone chaperone for Htz1p/H2A-H2B dimer (
13 proteins:
10 P,
3 A,
0 F )
SSRP : Histone chaperone (Pob3 and SSRP homologs; FACT complex proteins) (
78 proteins:
38 P,
6 A,
23 F )
SGA : Nucleosome assembly factor (ASF1 homologs) (
104 proteins:
40 P,
15 A,
37 F )
+
RNA Polymerase Transcription Initiation Factors (
1444 proteins:
688 P,
248 A,
399 F )
+
Mediator complex components (
1444 proteins:
688 P,
248 A,
399 F )
+
CDK (
194 proteins:
97 P,
34 A,
50 F )
CDPK : Cyclin-dependent protein kinase (
62 proteins:
34 P,
6 A,
18 F )
MED13SUB : Mediator of RNA polymerase II transcription subunit 13 (
59 proteins:
26 P,
15 A,
13 F )
MED12SUB : Mediator of RNA polymerase II transcription subunit 12 (
65 proteins:
29 P,
13 A,
19 F )
CYCA : Cyclin family protein group A (
8 proteins:
8 P,
0 A,
0 F )
+
Tail (
347 proteins:
181 P,
47 A,
98 F )
MED3SUB : Mediator of RNA polymerase II transcription subunit 3 (
18 proteins:
0 P,
0 A,
18 F )
MED24SUB : Mediator of RNA polymerase II transcription subunit 24 (
57 proteins:
45 P,
8 A,
0 F )
MED5SUB : Mediator of RNA polymerase II transcription subunit 5 (
16 proteins:
0 P,
0 A,
16 F )
MED2SUB : Mediator of RNA polymerase II transcription subunit 2 (
15 proteins:
0 P,
1 A,
14 F )
MED29SUB : Mediator of RNA polymerase II transcription subunit 29 (
33 proteins:
21 P,
6 A,
2 F )
MED16SUB : Mediator of RNA polymerase II transcription subunit 16 (
55 proteins:
29 P,
7 A,
17 F )
MED15SUB : Mediator of RNA polymerase II transcription subunit 15 (
62 proteins:
34 P,
9 A,
15 F )
MED14SUB : Mediator of RNA polymerase II transcription subunit 14 (
56 proteins:
29 P,
7 A,
16 F )
MED27SUB : Mediator of RNA polymerase II transcription subunit 27 (
35 proteins:
23 P,
9 A,
0 F )
+
Unassigned (
135 proteins:
81 P,
40 A,
0 F )
MED30SUB : Mediator of RNA polymerase II transcription subunit 30 (
29 proteins:
17 P,
9 A,
0 F )
MED23SUB : Mediator of RNA polymerase II transcription subunit 23 (
37 proteins:
24 P,
9 A,
0 F )
MED28SUB : Mediator of RNA polymerase II transcription subunit 28 (
31 proteins:
19 P,
8 A,
0 F )
MED26SUB : Mediator of RNA polymerase II transcription subunit 26 (
10 proteins:
0 P,
7 A,
0 F )
MED25SUB : Mediator of RNA polymerase II transcription subunit 25 (
28 proteins:
21 P,
7 A,
0 F )
+
Head (
434 proteins:
200 P,
67 A,
135 F )
MED18SUB : Mediator of RNA polymerase II transcription subunit 18 (
54 proteins:
26 P,
7 A,
17 F )
MED20SUB : Mediator of RNA polymerase II transcription subunit 20 (
53 proteins:
25 P,
8 A,
16 F )
MED8SUB : Mediator of RNA polymerase II transcription subunit 8 (
55 proteins:
24 P,
8 A,
19 F )
MED11SUB : Mediator of RNA polymerase II transcription subunit 11 (
49 proteins:
24 P,
7 A,
15 F )
MED17SUB : Mediator of RNA polymerase II transcription subunit 17 (
54 proteins:
24 P,
9 A,
18 F )
MED19SUB : Mediator of RNA polymerase II transcription subunit 19 (
59 proteins:
29 P,
10 A,
16 F )
MED6SUB : Mediator of RNA polymerase II transcription subunit 6 (
54 proteins:
23 P,
9 A,
18 F )
MED22SUB : Mediator of RNA polymerase II transcription subunit 22 (
56 proteins:
25 P,
9 A,
16 F )
+
Middle (
334 proteins:
129 P,
60 A,
116 F )
MED31SUB : Mediator of RNA polymerase II transcription subunit 31 (
53 proteins:
24 P,
8 A,
17 F )
MED1SUB : Mediator of RNA polymerase II transcription subunit 1 (
34 proteins:
0 P,
11 A,
18 F )
MED21SUB : Mediator of RNA polymerase II transcription subunit 21 (
49 proteins:
23 P,
9 A,
13 F )
MED10SUB : Mediator of RNA polymerase II transcription subunit 10 (
56 proteins:
26 P,
8 A,
18 F )
MED9SUB : Mediator of RNA polymerase II transcription subunit 9 (
35 proteins:
9 P,
7 A,
15 F )
MED7SUB : Mediator of RNA polymerase II transcription subunit 7 (
53 proteins:
24 P,
8 A,
17 F )
MED4SUB : Mediator of RNA polymerase II transcription subunit 4 (
54 proteins:
23 P,
9 A,
18 F )
+
RNA Polymerase Transcription Elongation Factors (
1180 proteins:
544 P,
59 A,
466 F )
+
Other RNA polymerase II elongation factors (
417 proteins:
210 P,
22 A,
145 F )
ELF : Transcription Elongation Factor (Elf1 homologs) (
6 proteins:
2 P,
2 A,
0 F )
TF2S : transcription elongation factor TFIIS (
11 proteins:
11 P,
0 A,
0 F )
GTI : Global transcription factor group I (Spt2 homologs) (
40 proteins:
21 P,
2 A,
15 F )
GTC : Global transcription factor group C (Spt16 homologs) (
112 proteins:
61 P,
5 A,
37 F )
GTG : Transcription elongation-nucleosome displacement proteins (Spt4 homologs) (
59 proteins:
25 P,
4 A,
22 F )
GTB : Transcription elongation-nucleosome displacement proteins (Spt6 homologs) (
91 proteins:
42 P,
4 A,
36 F )
GTA : Transcription elongation-nucleosome displacement proteins (Spt5 homologs) (
98 proteins:
48 P,
5 A,
35 F )
+
PAF1 Complex Components (
369 proteins:
164 P,
22 A,
145 F )
PAFB : PAF1 complex protein (Leo1 homologs) (
74 proteins:
35 P,
5 A,
25 F )
PAFA : PAF1 complex protein (Paf1 homologs) (
61 proteins:
30 P,
4 A,
24 F )
PAFE : PAF1 complex protein (Cdc73 homologs) (
74 proteins:
33 P,
4 A,
31 F )
PAFD : PAF1 complex protein (Rtf1 homologs) (
76 proteins:
34 P,
4 A,
28 F )
PAFC : PAF1 complex protein (Ctr9 homologs) (
84 proteins:
32 P,
5 A,
37 F )
+
TATA Box Binding Protein Associated Factors (
394 proteins:
170 P,
15 A,
176 F )
TAFTW : TATA Box Binding Protein Associated Factors (TAF2 Homologs) (
18 proteins:
11 P,
1 A,
6 F )
TAFTN : TATA Box Binding Protein Associated Factors (TAF13 Homologs) (
10 proteins:
1 P,
0 A,
9 F )
TAFFN : TATA Box Binding Protein Associated Factors (TAF14 Homologs) (
22 proteins:
0 P,
0 A,
22 F )
HAF : TATA Box Binding Protein Associated Factors (TAF1 Homologs) (
104 proteins:
47 P,
6 A,
41 F )
TAFTV : TATA Box Binding Protein Associated Factors (TAF12Homologs) (
16 proteins:
8 P,
0 A,
5 F )
TAFSV : TATA Box Binding Protein Associated Factors (TAF7 Homologs) (
10 proteins:
4 P,
0 A,
5 F )
TAFFF : TATA Box Binding Protein Associated Factors (TAF15 Homologs) (
7 proteins:
7 P,
0 A,
0 F )
TAFEI : TATA Box Binding Protein Associated Factors (TAF8 Homologs) (
30 proteins:
20 P,
0 A,
10 F )
TAFNI : TATA Box Binding Protein Associated Factors (TAF9 Homologs) (
10 proteins:
4 P,
0 A,
6 F )
TAFEL : TATA Box Binding Protein Associated Factors (TAF11 Homologs) (
10 proteins:
5 P,
0 A,
4 F )
TAFTH : TATA Box Binding Protein Associated Factors (TAF3 Homologs) (
6 proteins:
0 P,
0 A,
6 F )
TAFSX : TATA Box Binding Protein Associated Factors (TAF6 Homologs) (
21 proteins:
13 P,
1 A,
7 F )
TAFTE : TATA Box Binding Protein Associated Factors (TAF10 Homologs) (
11 proteins:
1 P,
1 A,
9 F )
TAFFO : TATA Box Binding Protein Associated Factors (TAF4 Homologs) (
16 proteins:
12 P,
0 A,
4 F )
TAFV : TATA Box Binding Protein Associated Factors (TAF5 Homologs) (
103 proteins:
37 P,
6 A,
42 F )
+
Chromatin Remodeling Complexes (
4783 proteins:
2222 P,
345 A,
1687 F )
+
ATP-Dependent Nucleosome Remodeling (
3958 proteins:
1818 P,
281 A,
1419 F )
TUP : TUP1 Family of Transcription Repressors (fungal-specific) with a proposed role in chromatin remodeling (
46 proteins:
0 P,
0 A,
45 F )
+
CHB : SWI/SNF and RSC chromatin remodeling complex proteins (Swi3 and Rsc8 homologs) (
195 proteins:
131 P,
7 A,
48 F )
ARATH SWI3D Group (
36 proteins:
36 P,
0 A,
0 F )
+
SWI3_RSC8 Group (
67 proteins:
3 P,
7 A,
48 F )
SACCE_Rsc8 Group (
10 proteins:
0 P,
0 A,
10 F )
Animal Swi3/Rsc8 homologs (
16 proteins:
1 P,
7 A,
0 F )
SACCE_Swi3 Group (
9 proteins:
0 P,
0 A,
9 F )
Fungal Swi3/Rsc8 Homologs (
30 proteins:
1 P,
0 A,
29 F )
ARATH SWI3A Group (
32 proteins:
32 P,
0 A,
0 F )
ARATH SWI3C Group (
32 proteins:
32 P,
0 A,
0 F )
ARATH SWI3B Group (
28 proteins:
28 P,
0 A,
0 F )
SWRCA : SWR complex proteins (SWC4 homlogs) (
73 proteins:
28 P,
7 A,
29 F )
+
RUVBL : eukaryotic homologs of the bacterial DNA-dependent ATPase and helicase RuvB (
189 proteins:
83 P,
11 A,
76 F )
RVB2 like proteins (
77 proteins:
34 P,
6 A,
30 F )
RVB1 like proteins (
81 proteins:
40 P,
5 A,
28 F )
+
CHE : SWI/SNF chromatin remodeling complex proteins (Snf5 homologs) (
108 proteins:
32 P,
11 A,
58 F )
SNF5_animals (
15 proteins:
0 P,
11 A,
0 F )
Fungal Snf5 Homologs (
30 proteins:
0 P,
0 A,
30 F )
SNF5_plants (
32 proteins:
32 P,
0 A,
0 F )
Fungal SFH1 Homologs (
26 proteins:
0 P,
0 A,
26 F )
+
CHR : SNF2 super family (Snf2, Ris1, Rad26 superclasses) (
2506 proteins:
1185 P,
192 A,
805 F )
+
RIS1 Superclass (
662 proteins:
280 P,
22 A,
295 F )
+
RAD5 class (
105 proteins:
49 P,
0 A,
38 F )
ARATH_32 Group (
20 proteins:
20 P,
0 A,
0 F )
ARATH_29 Group (
55 proteins:
24 P,
0 A,
23 F )
Fungal specific clade (
46 proteins:
0 P,
0 A,
46 F )
+
RIS1 class (
165 proteins:
81 P,
0 A,
84 F )
Sc_RIS Group (
35 proteins:
0 P,
0 A,
35 F )
Filamentous fungi group (
27 proteins:
0 P,
0 A,
27 F )
Ris_odds (
8 proteins:
0 P,
0 A,
8 F )
CHR27_CHR28 Group (
47 proteins:
41 P,
0 A,
6 F )
CHR30_CHR33 Group (
34 proteins:
34 P,
0 A,
0 F )
+
CHR36/39 class (
174 proteins:
79 P,
9 A,
67 F )
CHR39 class (
63 proteins:
34 P,
0 A,
22 F )
CHR36 class (
89 proteins:
39 P,
9 A,
31 F )
DNA_methylase (
22 proteins:
6 P,
0 A,
14 F )
RAD16 class (
85 proteins:
34 P,
0 A,
40 F )
SMARCA3 class (
66 proteins:
35 P,
6 A,
19 F )
Lodestar class (
20 proteins:
1 P,
7 A,
1 F )
+
RAD26 Superclass (
641 proteins:
372 P,
38 A,
139 F )
+
DRD1 class (
125 proteins:
125 P,
0 A,
0 F )
CHR31 group (
44 proteins:
44 P,
0 A,
0 F )
DRD subclass (
47 proteins:
47 P,
0 A,
0 F )
CHR38 group (
34 proteins:
34 P,
0 A,
0 F )
+
HARP class (
92 proteins:
66 P,
3 A,
0 F )
ARATH_18 Group (
34 proteins:
26 P,
0 A,
0 F )
ARATH_14 Group (
28 proteins:
26 P,
0 A,
0 F )
+
RAD54 class (
145 proteins:
44 P,
9 A,
69 F )
Group C3a (
96 proteins:
32 P,
4 A,
40 F )
Group C3b (
48 proteins:
11 P,
5 A,
29 F )
+
RAD26 class (
203 proteins:
107 P,
14 A,
55 F )
RAD26-like subclass (
69 proteins:
34 P,
6 A,
22 F )
CHR24 subclass (
49 proteins:
37 P,
3 A,
0 F )
RAD26 subclass (
85 proteins:
36 P,
5 A,
33 F )
ATRX class (
76 proteins:
30 P,
12 A,
15 F )
+
SNF2 Superclass (
1174 proteins:
530 P,
120 A,
359 F )
ISWI class (
153 proteins:
54 P,
8 A,
53 F )
+
CHD class (
316 proteins:
153 P,
52 A,
61 F )
CHD1 subclass (
94 proteins:
35 P,
10 A,
40 F )
HOMSA_CHDL and ARATH_CHR10 sublcass (
41 proteins:
31 P,
8 A,
0 F )
+
Mi2 subclass (
120 proteins:
72 P,
18 A,
20 F )
Animal Mi-2 Subgroup (
27 proteins:
0 P,
18 A,
0 F )
Monocot chromodomain group (
10 proteins:
10 P,
0 A,
0 F )
Fungal group; similarity to animal Mi-2 subgroup (
20 proteins:
0 P,
0 A,
20 F )
CHR4 Group (
26 proteins:
26 P,
0 A,
0 F )
PKL Group (
34 proteins:
33 P,
0 A,
0 F )
Kismet subclass (
61 proteins:
15 P,
16 A,
1 F )
MOM group (
26 proteins:
26 P,
0 A,
0 F )
TafII170/MOT class (
104 proteins:
39 P,
8 A,
41 F )
+
SNF2 class (
188 proteins:
109 P,
11 A,
52 F )
Plant SNF2 homologs (
38 proteins:
38 P,
0 A,
0 F )
Plant ARATH SYD Group (
30 proteins:
30 P,
0 A,
0 F )
Plant ARATH UBC6 Group (
113 proteins:
41 P,
10 A,
52 F )
SNF2 odds (
2 proteins:
2 P,
0 A,
0 F )
DDM/LSH class (
95 proteins:
45 P,
7 A,
35 F )
+
FSI class (
290 proteins:
102 P,
34 A,
117 F )
SWR1 subclass (
110 proteins:
38 P,
16 A,
40 F )
INO80 subclass (
77 proteins:
27 P,
9 A,
36 F )
FUN30/ETL subclass (
103 proteins:
37 P,
9 A,
41 F )
+
CHC : SWI/SNF and RSC chromatin remodeling complex proteins (Swp73 and Rsc6 homologs) (
112 proteins:
54 P,
12 A,
37 F )
Fungal ScUAF Group (
5 proteins:
0 P,
1 A,
4 F )
SMARD/SWP73/RSC6 group (
106 proteins:
53 P,
11 A,
33 F )
+
ARP : Actin superfamily; actin-related proteins (
729 proteins:
305 P,
41 A,
321 F )
+
Arp4_7 Superclass (
171 proteins:
103 P,
8 A,
52 F )
Fungal Arp4 and 7 Groups (
51 proteins:
0 P,
0 A,
51 F )
Plant and Animal ARP4 Class (
67 proteins:
50 P,
8 A,
1 F )
Plant ARP7 Group (
53 proteins:
53 P,
0 A,
0 F )
+
Arp1_2_3 Superclass (
241 proteins:
74 P,
19 A,
119 F )
ARP2 Class (
85 proteins:
31 P,
5 A,
40 F )
ARP3 Class (
97 proteins:
43 P,
7 A,
37 F )
ARP1 Class (
59 proteins:
0 P,
7 A,
42 F )
+
ARP5_6/AtARP8 Superclass (
193 proteins:
96 P,
9 A,
72 F )
ARP5 Class (
79 proteins:
32 P,
4 A,
38 F )
ARP6 Class (
81 proteins:
31 P,
5 A,
34 F )
Plant ARP8 Class (
33 proteins:
33 P,
0 A,
0 F )
+
ScARP8_9/AtARP9 Superclass (
113 proteins:
31 P,
3 A,
76 F )
Fungal Specific Class (
16 proteins:
0 P,
0 A,
16 F )
Sc ARP9 Class (
27 proteins:
1 P,
0 A,
26 F )
Sc ARP8/At ARP9 Class (
70 proteins:
30 P,
3 A,
34 F )
+
Other Chromatin Remodeling Complexes and Associated Proteins (
825 proteins:
404 P,
64 A,
268 F )
+
NFC : NURF complex component (RBBP4/Caf1 homologs) (
222 proteins:
139 P,
10 A,
60 F )
Yeast MSI1 (
48 proteins:
1 P,
0 A,
47 F )
NFC4_5 group (
61 proteins:
60 P,
0 A,
0 F )
NFC1_2_3 group (
105 proteins:
75 P,
10 A,
9 F )
PATPA : Proteasomal ATPases; Group A (
105 proteins:
53 P,
9 A,
34 F )
PATPB : Proteasomal ATPases; Group B (
245 proteins:
55 P,
9 A,
136 F )
+
Esc-E(z)-E(Pc) complex of polycomb protein (
253 proteins:
157 P,
36 A,
38 F )
PGE : Polycomb group (esc homologs) (
60 proteins:
43 P,
7 A,
0 F )
EPL : Enhancer of Polycomb-like protein group [E(Pc) homologs] (
113 proteins:
47 P,
22 A,
36 F )
VEF : VEF Family (VRN2, EMF2, FIS2) (
80 proteins:
67 P,
7 A,
2 F )
+
Histone Modifications (
5352 proteins:
2846 P,
470 A,
1365 F )
+
Reversible methylation (
3377 proteins:
2043 P,
288 A,
677 F )
+
Methylation (
2311 proteins:
1346 P,
194 A,
504 F )
+
SDG : SET domain proteins (
1868 proteins:
1118 P,
161 A,
382 F )
+
SET Domain Protein Superclass A (
1135 proteins:
775 P,
97 A,
139 F )
+
KMT_H3K4 (
274 proteins:
189 P,
34 A,
15 F )
SETD7 Group (
9 proteins:
0 P,
7 A,
0 F )
ARATH_ATX1 (SDG27) Group (
44 proteins:
42 P,
0 A,
0 F )
ARATH_ATX4/5 Group (
66 proteins:
65 P,
0 A,
0 F )
+
SET1 Group (
78 proteins:
39 P,
8 A,
15 F )
ARATH_ATXR7 Group (
32 proteins:
26 P,
0 A,
1 F )
SDG732 Group (
16 proteins:
13 P,
0 A,
0 F )
TRR_TRX (
77 proteins:
43 P,
19 A,
0 F )
+
KMT_H3K9 [Su(var)3-9] (
446 proteins:
370 P,
27 A,
20 F )
+
Diverse Su(var)39 Group (
199 proteins:
139 P,
23 A,
20 F )
ARATH_SUVR5 Group (
34 proteins:
34 P,
0 A,
0 F )
HOMSA_SETD Group (
12 proteins:
0 P,
7 A,
0 F )
HOMSA_EHMT Group (Ga9) (
14 proteins:
0 P,
9 A,
0 F )
ARATH_SUVR3 Group (
26 proteins:
26 P,
0 A,
0 F )
CLR4/SUV39H1 Group (
36 proteins:
2 P,
7 A,
20 F )
ARATH_SUVR4 Group (
77 proteins:
77 P,
0 A,
0 F )
CAEEL-specific SuVar39 Group (
8 proteins:
0 P,
0 A,
0 F )
+
ARATH_SUVH Group (
232 proteins:
231 P,
0 A,
0 F )
SUVH1/SUVH3 Group (
89 proteins:
89 P,
0 A,
0 F )
ARATH_SUVH5/SUVH6 Group (
58 proteins:
58 P,
0 A,
0 F )
ARATH_Kryptonite Group (
44 proteins:
43 P,
0 A,
0 F )
ARATH_SUVH2/SUVH9 Group (
41 proteins:
41 P,
0 A,
0 F )
Animal SETMAR group (
7 proteins:
0 P,
4 A,
0 F )
+
KMT_H3K27 (Enhancer of zeste Group) (
111 proteins:
75 P,
12 A,
11 F )
ARATH_EZA1 Group (
36 proteins:
35 P,
0 A,
0 F )
ARATH_CLF Group (
36 proteins:
35 P,
0 A,
0 F )
Fungal group; similarity to Enhancer of Zeste Proteins (
11 proteins:
0 P,
0 A,
11 F )
+
KMT_H3K36 (SET2/SETD2/ASH) Group) (
228 proteins:
128 P,
18 A,
54 F )
ASH1 Group (
95 proteins:
67 P,
3 A,
17 F )
+
SET2 Group (
88 proteins:
37 P,
4 A,
37 F )
SET2/SETD2 Subgroup (
51 proteins:
1 P,
4 A,
37 F )
ARATH_EFS Group (
37 proteins:
36 P,
0 A,
0 F )
NSD1 (
19 proteins:
0 P,
11 A,
0 F )
ARATH_ASHH1 Group (
26 proteins:
24 P,
0 A,
0 F )
KMT_H4K20 (PR-Set7/8) (
11 proteins:
0 P,
6 A,
0 F )
+
SET Domain Protein Superclass B (
703 proteins:
336 P,
55 A,
233 F )
RuBisCO LSMT (
46 proteins:
27 P,
8 A,
3 F )
ARATH_ATXR5 Group (
60 proteins:
60 P,
0 A,
0 F )
SACCE_SET3 Group (
41 proteins:
0 P,
8 A,
25 F )
+
S-ET interrupted and unclassified (
366 proteins:
156 P,
31 A,
134 F )
SMYD Group (
8 proteins:
0 P,
8 A,
0 F )
Suv420 (
37 proteins:
1 P,
11 A,
21 F )
S-ET interrupted (
319 proteins:
154 P,
12 A,
112 F )
SET5 (
2 proteins:
1 P,
0 A,
1 F )
SACCE_SET7 Family (
190 proteins:
93 P,
8 A,
71 F )
+
PRMT : Protein arginine methyltransferases (
409 proteins:
228 P,
28 A,
96 F )
PRMT3 (
49 proteins:
35 P,
7 A,
1 F )
PRMT6 (
77 proteins:
43 P,
0 A,
23 F )
PRMT1 (
95 proteins:
38 P,
6 A,
37 F )
PRMT5 (
80 proteins:
36 P,
5 A,
28 F )
CARM1 (
53 proteins:
40 P,
5 A,
2 F )
PRMT7 (
49 proteins:
35 P,
5 A,
0 F )
DOTS : Nucleosomal histone H3-Lys79 methylase (Dot1 homologs) (
34 proteins:
0 P,
5 A,
26 F )
+
Demethylation (
1066 proteins:
697 P,
94 A,
173 F )
+
HDMA : Histone demethylases (AOF2/ LSD1 homologs) (
165 proteins:
124 P,
9 A,
22 F )
ARATH_LDL1 Group (
24 proteins:
24 P,
0 A,
0 F )
ARATH_LDL4 Group (
33 proteins:
31 P,
0 A,
1 F )
ARATH_LDL2 Group (
28 proteins:
28 P,
0 A,
0 F )
AOF2/ LSD1 homologs (
26 proteins:
0 P,
9 A,
11 F )
ARATH_FLD Group (
28 proteins:
28 P,
0 A,
0 F )
+
JMJ : Jumonji domain group (
901 proteins:
573 P,
85 A,
151 F )
+
jmjN_jmjC Family (
393 proteins:
254 P,
30 A,
79 F )
Plant Specific FYRN_FYRC Group (
110 proteins:
105 P,
0 A,
0 F )
+
Jarid Group (
106 proteins:
33 P,
17 A,
44 F )
Jarid2 Subgroup (transcription repressors) (
7 proteins:
0 P,
4 A,
0 F )
Jarid1 Subgroup (H3K4 histone demethylases) (
99 proteins:
33 P,
13 A,
44 F )
+
Plant Specific Zinc Finger (
112 proteins:
111 P,
0 A,
0 F )
C2H2 zinc finger (
72 proteins:
72 P,
0 A,
0 F )
C5HC2 zinc finger (
40 proteins:
39 P,
0 A,
0 F )
Jmjd2 Group (
64 proteins:
5 P,
13 A,
35 F )
+
jmjC Family (
502 proteins:
317 P,
55 A,
69 F )
JmjD1 Group (
193 proteins:
163 P,
11 A,
14 F )
JMJD4 Group (
134 proteins:
84 P,
8 A,
25 F )
HSPB Group (
100 proteins:
67 P,
9 A,
6 F )
Yeast ECM5 Family (
3 proteins:
0 P,
0 A,
3 F )
PHF8 (plant homeodomain finger protein 8) Group (
19 proteins:
2 P,
11 A,
0 F )
JHDM1 Group (H3K36 histone demethylases) (
35 proteins:
0 P,
7 A,
21 F )
JMJD3 group (
17 proteins:
1 P,
9 A,
0 F )
+
Reversible acetylation (
1718 proteins:
679 P,
169 A,
606 F )
+
Acetylation (
651 proteins:
232 P,
54 A,
267 F )
+
HAG : Histone acetyltransferases (GNAT superfamily) (
305 proteins:
110 P,
19 A,
138 F )
HAT1 Family (
78 proteins:
29 P,
5 A,
34 F )
+
ELP3 Family (
125 proteins:
43 P,
5 A,
59 F )
HPA2/HPA3 Subfamily (
22 proteins:
0 P,
0 A,
20 F )
ELP3 Subfamily (
103 proteins:
43 P,
5 A,
39 F )
GCN5 Family (
100 proteins:
38 P,
9 A,
43 F )
+
HAM : Histone acetyltransferases (MYST family) (
225 proteins:
55 P,
27 A,
108 F )
ESA1 (
50 proteins:
0 P,
5 A,
40 F )
SAS2 group (
48 proteins:
0 P,
9 A,
29 F )
SAS3 group (
60 proteins:
1 P,
13 A,
37 F )
HAM1_2 group (
63 proteins:
54 P,
0 A,
0 F )
+
HAC : Histone acetyltransferases [CREBBP (CBP) family] (
100 proteins:
67 P,
8 A,
0 F )
HAC2 Group (
28 proteins:
28 P,
0 A,
0 F )
FSHAT : Fungal-specific histone acetyltransferase (
21 proteins:
0 P,
0 A,
21 F )
+
Deacetylation (
1067 proteins:
447 P,
115 A,
339 F )
+
SRT : Histone deacetylases (SIR2 family) (
351 proteins:
67 P,
51 A,
161 F )
Class III (
28 proteins:
1 P,
5 A,
17 F )
Class II (
58 proteins:
26 P,
5 A,
16 F )
Class IV (
61 proteins:
30 P,
10 A,
3 F )
+
Class I (
195 proteins:
6 P,
28 A,
123 F )
group 2 (
90 proteins:
5 P,
19 A,
40 F )
group 3 (
45 proteins:
1 P,
0 A,
44 F )
group 1 (
59 proteins:
0 P,
9 A,
39 F )
HDT : Histone deacetylases (plant-specific HD2 family) (
39 proteins:
39 P,
0 A,
0 F )
+
HDA : Histone deacetylases (Rpd3/HDA1 superfamily) (
677 proteins:
341 P,
64 A,
178 F )
HDA14 Group (
45 proteins:
40 P,
0 A,
0 F )
Class II RPD3 Family (
174 proteins:
79 P,
20 A,
36 F )
Class III RPD3 Family (
68 proteins:
45 P,
10 A,
0 F )
Class I RPD3 Family (
295 proteins:
151 P,
25 A,
85 F )
Hos3 Group (
35 proteins:
0 P,
0 A,
35 F )
HsHdac8 Group (HDA508) (
14 proteins:
0 P,
9 A,
3 F )
HDA8 Group (
26 proteins:
25 P,
0 A,
0 F )
HOS1 Group (
11 proteins:
0 P,
0 A,
11 F )
+
Ubiquination (
257 proteins:
124 P,
13 A,
82 F )
HUPA : Histone ubiquitination proteins group A (Bre1 homologs) (
104 proteins:
62 P,
6 A,
31 F )
HUPB : Histone ubiquitination proteins group B (Rad6 homologs) (
153 proteins:
62 P,
7 A,
51 F )
+
Histone Modification-Associated Proteins and Complexes (
945 proteins:
414 P,
78 A,
295 F )
SWDA : COMPASS (Set1C) complex protein (SWD1 homologs) (
82 proteins:
34 P,
5 A,
36 F )
HMTA : Set1 complex component (Ash2/Bre2 homologs) (
82 proteins:
35 P,
8 A,
33 F )
+
YDG : Yeats Domain Proteins (
133 proteins:
56 P,
27 A,
29 F )
GAS41 (
55 proteins:
54 P,
0 A,
0 F )
SAS5 (
18 proteins:
0 P,
14 A,
1 F )
YEATS2 Group (
32 proteins:
1 P,
13 A,
1 F )
Yeast YAF9 Group (
24 proteins:
0 P,
0 A,
24 F )
HCP : Sin3 complex components (SAP18 homologs) (
43 proteins:
20 P,
5 A,
12 F )
HXA : Histone acetyltransferase complex component (Ada2 homologs) (
110 proteins:
53 P,
10 A,
34 F )
SNT : Histone deacetylase complex protein (Sin3 homologs) (
146 proteins:
76 P,
8 A,
46 F )
+
SWDC : COMPASS (Set1C) complex protein (SWD3 homologs) (
229 proteins:
75 P,
10 A,
65 F )
SWDC2 Group (
35 proteins:
27 P,
0 A,
5 F )
SWDC1 Group (
34 proteins:
32 P,
1 A,
0 F )
+
SWDB : COMPASS (Set1C) complex protein (SWD2 homologs) (
114 proteins:
65 P,
5 A,
34 F )
SWDB2 Group (
28 proteins:
28 P,
0 A,
0 F )
SWDB1 Group (
35 proteins:
31 P,
0 A,
3 F )
SSC : SAS4 protein group (yeast-specific) (
6 proteins:
0 P,
0 A,
6 F )
+
Modified-Histone Binding Proteins (
1107 proteins:
579 P,
154 A,
245 F )
+
Bromodomain Proteins (
296 proteins:
225 P,
14 A,
31 F )
+
GTE : Global transcription factor group E (Bdf1, BRD4 and BRD2 (RING3) homologs) (
296 proteins:
225 P,
14 A,
31 F )
Animal, fungi (
75 proteins:
11 P,
14 A,
30 F )
+
Plant Clades (
215 proteins:
209 P,
0 A,
0 F )
Plant Clades 2 (
73 proteins:
71 P,
0 A,
0 F )
Plant Clades 3 (
41 proteins:
41 P,
0 A,
0 F )
Plant Clades 1 (
101 proteins:
97 P,
0 A,
0 F )
+
BRD : Diverse bromodomain-containing proteins (polybromo1, yeast RSC, and human BRD homologs) (
385 proteins:
173 P,
58 A,
105 F )
HsBRD8, BAZ1B group (
20 proteins:
0 P,
5 A,
8 F )
+
yeast RSC group (
50 proteins:
0 P,
0 A,
50 F )
RSC1/2 group (+ BAH domain) (
35 proteins:
0 P,
0 A,
35 F )
RSC4 group (- BAH domain) (
15 proteins:
0 P,
0 A,
15 F )
+
plant specific (
79 proteins:
79 P,
0 A,
0 F )
with myb_DNA-binding domain (
50 proteins:
50 P,
0 A,
0 F )
Impacted by sequence quality (
1 proteins:
1 P,
0 A,
0 F )
no myb_DNA-binding domain (
25 proteins:
25 P,
0 A,
0 F )
+
single domain group (
128 proteins:
85 P,
18 A,
5 F )
HsBRD1, BRRF1, BRPF3 group (
28 proteins:
1 P,
11 A,
5 F )
HsBRD7 and 9 group (
18 proteins:
2 P,
7 A,
0 F )
+
Plant Bromodomain Group (
82 proteins:
82 P,
0 A,
0 F )
Monocot specific group_BRD101 (
14 proteins:
14 P,
0 A,
0 F )
Monocot specific group_BRD102 (
2 proteins:
2 P,
0 A,
0 F )
AtBRD1 Group (
31 proteins:
31 P,
0 A,
0 F )
BRD918 Group (
11 proteins:
11 P,
0 A,
0 F )
AtBRD13 Group (
23 proteins:
23 P,
0 A,
0 F )
+
HsFALZ, TRIM24, TRIM33 groups (
32 proteins:
0 P,
21 A,
0 F )
HsFALZ group (
8 proteins:
0 P,
5 A,
0 F )
HsSP140, TRIM24, TRIM33 group (
15 proteins:
0 P,
9 A,
0 F )
HsZYMD11, PRKCBP1 group (
9 proteins:
0 P,
7 A,
0 F )
SPT7 group (
35 proteins:
0 P,
0 A,
30 F )
animal polybromo1 group (
24 proteins:
4 P,
10 A,
5 F )
BRAT : Bromodomain-containing proteins containing AAA ATPase domains (
61 proteins:
35 P,
6 A,
15 F )
BRWD : Bromodomain-containing proteins containing WD40 domain repeats (
59 proteins:
40 P,
10 A,
0 F )
CRD : Diverse group of chromodomain-containing proteins (
88 proteins:
24 P,
31 A,
15 F )
MRG : MRG domain-containing proteins (
81 proteins:
38 P,
7 A,
29 F )
INGF : Inhibitor of Growth protein group (ING1-5 homologs) (
137 proteins:
44 P,
28 A,
50 F )
+
DNA Modifying Proteins (
813 proteins:
645 P,
47 A,
80 F )
+
DMT : DNA methyltransferases (
348 proteins:
260 P,
31 A,
39 F )
+
DNMT Class (CpG/CpnpG) (
168 proteins:
125 P,
5 A,
37 F )
DNMT1 class (CpG) (
77 proteins:
53 P,
5 A,
18 F )
Yeast Specific DMT (
19 proteins:
0 P,
0 A,
19 F )
CMT1 class (CpNpG) (
72 proteins:
72 P,
0 A,
0 F )
DNMT2 class (CpNpN;RNA-guided) (
57 proteins:
36 P,
7 A,
2 F )
DRM class (
88 proteins:
88 P,
0 A,
0 F )
DNMT3 class (
22 proteins:
2 P,
17 A,
0 F )
VIM : Variant in Methylation (
41 proteins:
41 P,
0 A,
0 F )
+
DNG : Superfamily of DNA glycosylases (
424 proteins:
344 P,
16 A,
41 F )
Ros/Demeter Group (
132 proteins:
132 P,
0 A,
0 F )
+
Non-histone DNA Binding Proteins (
995 proteins:
579 P,
230 A,
99 F )
+
HMGB : High Mobility Group Family B (
366 proteins:
139 P,
106 A,
71 F )
Structure-specific recognition protein (
19 proteins:
3 P,
0 A,
12 F )
Arid Domain Group (
55 proteins:
55 P,
0 A,
0 F )
Plant-specific, single HMG box domain Group (
49 proteins:
39 P,
5 A,
4 F )
EBP : BAH-PHD domain-containing protein group (
97 proteins:
97 P,
0 A,
0 F )
+
ARID : ARID/BRIGHT DNA binding domain group (
243 proteins:
133 P,
64 A,
28 F )
Plant Arid Group (
132 proteins:
128 P,
3 A,
0 F )
+
Animal Arid Group (
77 proteins:
0 P,
61 A,
0 F )
Tudor_RBB1NT Group (
16 proteins:
0 P,
13 A,
0 F )
ARID2 group (
10 proteins:
0 P,
5 A,
0 F )
ARID3 group (
12 proteins:
0 P,
9 A,
0 F )
ARID5A_B group (
20 proteins:
0 P,
20 A,
0 F )
+
MBD : Methyl binding domain proteins (
289 proteins:
210 P,
60 A,
0 F )
ARATH MBD10_MBD11 Group (
54 proteins:
42 P,
7 A,
0 F )
ARATH MBD1_MBD4 Group (
23 proteins:
23 P,
0 A,
0 F )
Bromodomain group (
39 proteins:
35 P,
0 A,
0 F )
HOMSA_BAZ2 Group (
15 proteins:
1 P,
13 A,
0 F )
HOMSA MBD4 Group (
10 proteins:
0 P,
10 A,
0 F )
MECP2 Group (
7 proteins:
0 P,
7 A,
0 F )
ARATH MBD5_MBD6 Group (
12 proteins:
12 P,
0 A,
0 F )
ARATH_MBD2 Group (
39 proteins:
39 P,
0 A,
0 F )
HOMSA MBD5_MBD6 Group (
9 proteins:
0 P,
7 A,
0 F )
+
Animal MBD1_MBD2_MBD3 Group (
42 proteins:
26 P,
11 A,
0 F )
HOMSA MBD2_MBD3 Group (
16 proteins:
0 P,
11 A,
0 F )
MBD1 Group (
26 proteins:
26 P,
0 A,
0 F )
+
RNAi Components (
1276 proteins:
903 P,
81 A,
178 F )
DRSH : Animal-specific class II Ribonuclease III proteins (Drosho homologs) (
14 proteins:
0 P,
9 A,
0 F )
RHEL : RNA helicases (
60 proteins:
31 P,
14 A,
0 F )
+
DCL : Dicer-Like group (
171 proteins:
108 P,
5 A,
46 F )
ARATH_DCL3 Group (
38 proteins:
28 P,
0 A,
8 F )
HEN : HUA Enhancer (
42 proteins:
30 P,
7 A,
2 F )
AGO : Argonaute gene family (
484 proteins:
327 P,
30 A,
68 F )
RDR : RNA-dependent RNA polymerases (
199 proteins:
128 P,
0 A,
62 F )
DRB : Double stranded RNA-Binding protein group (
149 proteins:
124 P,
16 A,
0 F )
NRPDA : RNA Polymerase IV Large Subunit (
56 proteins:
55 P,
0 A,
0 F )
ERI : Enhanced RNA interference (
9 proteins:
9 P,
0 A,
0 F )
SGS : Suppressor of gene silencing (
43 proteins:
43 P,
0 A,
0 F )
NRPDB : RNA Polymerase IV Small Subunit (
49 proteins:
48 P,
0 A,
0 F )
+
Chromosome Dynamics (
613 proteins:
237 P,
43 A,
260 F )
+
Condensin Complex Components (
613 proteins:
237 P,
43 A,
260 F )
CPD : Condensin complex component, non-SMC subunit (Cnd1 homologs) (
88 proteins:
34 P,
6 A,
38 F )
CPH : Condensin complex component; Barren domain-containing, non-SMC subunit (
77 proteins:
35 P,
6 A,
30 F )
CPG : Condensin complex component, non-SMC subunit (
80 proteins:
31 P,
5 A,
36 F )
CPC : Condensin complex component; SMC protein group (
368 proteins:
137 P,
26 A,
156 F )
+
Flowering Proteins (
1226 proteins:
1213 P,
6 A,
2 F )
VPGA : Flowering control-associated proteins (VRN1 homologs) (
84 proteins:
84 P,
0 A,
0 F )
FGP : Flowering control-associated proteins; FRIGIDA group (
105 proteins:
105 P,
0 A,
0 F )
CONS : Flowering control-associated proteins; CONSTANS group (
210 proteins:
210 P,
0 A,
0 F )
LFY : Flowering control-associated proteins; LFY group (
40 proteins:
40 P,
0 A,
0 F )
FLCP : Flowering control-associated proteins (
550 proteins:
550 P,
0 A,
0 F )
MBTI : MADS-box Type I group (
40 proteins:
31 P,
3 A,
2 F )
VPGB : Flowering control-associated proteins (VIN3 homologs) (
77 proteins:
77 P,
0 A,
0 F )
FLT : Flowering control-associated proteins; FLT group (
120 proteins:
116 P,
3 A,
0 F )
